homomine report
July 13, 2024
Homomine report of Zm00001eb001720
o Basic information of Zm00001eb001720 from B73
| chr | start | end | strand | gene |
|---|---|---|---|---|
| chr1 | 5075499 | 5081601 | + | Zm00001eb001720 |
o Target hit in A188
Note: Below chromosomal interval might not cover the whole gene.
| chr | start | end | strand | gene | transcript |
|---|---|---|---|---|---|
| chr1 | 5211165 | 5220046 | + | Zm00056a000187 | Zm00056a000187_T001 |
o Visualization of Nucmer alignments
Fig 1. Nucmer alignment.
Nucmer was used to align sequences of the two sequences. Only uniquely aigned regions are displayed. Orange: repetitive sequences; light blue: untranslated regions; blue: coding regions.
| qstart | qend | sstart | send | qmatch | smatch | identity | qlen | slen | qry | subj |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 401 | 1 | 407 | 401 | 407 | 94.67 | 6103 | 8882 | Zm00001eb001720 | A188_chr1:5211165-5220046(+) |
| 393 | 2359 | 2377 | 4382 | 1967 | 2006 | 90.16 | 6103 | 8882 | Zm00001eb001720 | A188_chr1:5211165-5220046(+) |
| 2359 | 2973 | 4538 | 5121 | 615 | 584 | 90.48 | 6103 | 8882 | Zm00001eb001720 | A188_chr1:5211165-5220046(+) |
| 2973 | 3537 | 5465 | 6034 | 565 | 570 | 88.78 | 6103 | 8882 | Zm00001eb001720 | A188_chr1:5211165-5220046(+) |
| 3535 | 6103 | 6217 | 8882 | 2569 | 2666 | 90.40 | 6103 | 8882 | Zm00001eb001720 | A188_chr1:5211165-5220046(+) |
o Genomic variants with high or moderate impacts
| gene | pos | B73 | A188 | transcript | effect | impact | protVar |
|---|---|---|---|---|---|---|---|
| Zm00001eb001720 | 1592 | ACATG | A | Zm00001eb001720_T001 | frameshift_variant | HIGH | Cys1fs |
| Zm00001eb001720 | 1609 | C | T | Zm00001eb001720_T001 | missense_variant | MODERATE | Ala4Val |
| Zm00001eb001720 | 1621 | A | T | Zm00001eb001720_T001 | missense_variant | MODERATE | Gln8Leu |
| Zm00001eb001720 | 1626 | C | G | Zm00001eb001720_T001 | missense_variant | MODERATE | Arg10Gly |
| Zm00001eb001720 | 1659 | CCGG | C | Zm00001eb001720_T001 | conservative_inframe_deletion | MODERATE | Ala27del |
| Zm00001eb001720 | 1677 | G | C | Zm00001eb001720_T001 | missense_variant | MODERATE | Ala27Pro |
| Zm00001eb001720 | 1717 | C | A | Zm00001eb001720_T001 | missense_variant | MODERATE | Pro40Gln |
| Zm00001eb001720 | 2183 | A | T | Zm00001eb001720_T001 | stop_lost | HIGH | Ter156Leuext*? |
| Zm00001eb001720 | 4356 | G | A | Zm00001eb001720_T001 | missense_variant&splice_region_variant | MODERATE | Gly158Glu |
| Zm00001eb001720 | 4365 | T | G | Zm00001eb001720_T001 | missense_variant | MODERATE | Leu161Trp |
| Zm00001eb001720 | 4368 | G | T | Zm00001eb001720_T001 | missense_variant | MODERATE | Arg162Met |
| Zm00001eb001720 | 4392 | A | G | Zm00001eb001720_T001 | missense_variant | MODERATE | Gln170Arg |
| Zm00001eb001720 | 4434 | T | C | Zm00001eb001720_T001 | missense_variant | MODERATE | Ile184Thr |
| Zm00001eb001720 | 5185 | TGCGC | T | Zm00001eb001720_T001 | splice_donor_variant&splice_region_variant&intron_variant | HIGH | . |
| gene | pos | B73 | A188 | transcript | effect | impact | protVar |
|---|---|---|---|---|---|---|---|
| Zm00001eb001720 | 2183 | A | T | Zm00001eb001720_T002 | stop_lost | HIGH | Ter44Leuext*? |
| Zm00001eb001720 | 4356 | G | A | Zm00001eb001720_T002 | missense_variant&splice_region_variant | MODERATE | Gly46Glu |
| Zm00001eb001720 | 4365 | T | G | Zm00001eb001720_T002 | missense_variant | MODERATE | Leu49Trp |
| Zm00001eb001720 | 4368 | G | T | Zm00001eb001720_T002 | missense_variant | MODERATE | Arg50Met |
| Zm00001eb001720 | 4392 | A | G | Zm00001eb001720_T002 | missense_variant | MODERATE | Gln58Arg |
| Zm00001eb001720 | 4434 | T | C | Zm00001eb001720_T002 | missense_variant | MODERATE | Ile72Thr |
| Zm00001eb001720 | 5185 | TGCGC | T | Zm00001eb001720_T002 | splice_donor_variant&splice_region_variant&intron_variant | HIGH | . |
| gene | pos | B73 | A188 | transcript | effect | impact | protVar |
|---|---|---|---|---|---|---|---|
| Zm00001eb001720 | 1592 | ACATG | A | Zm00001eb001720_T003 | frameshift_variant | HIGH | Cys1fs |
| Zm00001eb001720 | 1609 | C | T | Zm00001eb001720_T003 | missense_variant | MODERATE | Ala4Val |
| Zm00001eb001720 | 1621 | A | T | Zm00001eb001720_T003 | missense_variant | MODERATE | Gln8Leu |
| Zm00001eb001720 | 1626 | C | G | Zm00001eb001720_T003 | missense_variant | MODERATE | Arg10Gly |
| Zm00001eb001720 | 1659 | CCGG | C | Zm00001eb001720_T003 | conservative_inframe_deletion | MODERATE | Ala27del |
| Zm00001eb001720 | 1677 | G | C | Zm00001eb001720_T003 | missense_variant | MODERATE | Ala27Pro |
| Zm00001eb001720 | 1717 | C | A | Zm00001eb001720_T003 | missense_variant | MODERATE | Pro40Gln |
| Zm00001eb001720 | 2183 | A | T | Zm00001eb001720_T003 | stop_lost | HIGH | Ter156Leuext*? |
| Zm00001eb001720 | 4356 | G | A | Zm00001eb001720_T003 | missense_variant&splice_region_variant | MODERATE | Gly158Glu |
| Zm00001eb001720 | 4365 | T | G | Zm00001eb001720_T003 | missense_variant | MODERATE | Leu161Trp |
| Zm00001eb001720 | 4368 | G | T | Zm00001eb001720_T003 | missense_variant | MODERATE | Arg162Met |
| Zm00001eb001720 | 4392 | A | G | Zm00001eb001720_T003 | missense_variant | MODERATE | Gln170Arg |
| Zm00001eb001720 | 4434 | T | C | Zm00001eb001720_T003 | missense_variant | MODERATE | Ile184Thr |
o Structural variation used B73 as the reference
SV was defined if either REF or ALT allele has at least 50 bp and the length difference of two alleles are at least 30 bp.
| seqname | start | end | svtype | svnote |
|---|---|---|---|---|
| Zm00001eb001720 | 391 | 392 | ins_1 | . |
| Zm00001eb001720 | 958 | 959 | ins_2 | . |
| Zm00001eb001720 | 2357 | 2358 | ins_3 | . |
| Zm00001eb001720 | 2976 | 2979 | ins_4 | . |
| Zm00001eb001720 | 3533 | 3534 | ins_5 | . |
o Structural variation used A188 as the reference
| seqname | start | end | svtype | svnote |
|---|---|---|---|---|
| A188_chr1:5211165-5220046(+) | 395 | 2376 | del_1 | . |
| A188_chr1:5211165-5220046(+) | 2914 | 2973 | del_2 | . |
| A188_chr1:5211165-5220046(+) | 4380 | 4537 | del_3 | . |
| A188_chr1:5211165-5220046(+) | 5124 | 5473 | del_4 | . |
| A188_chr1:5211165-5220046(+) | 6030 | 6216 | del_5 | . |
o All polymorphisms identified
| seqname | pos | REF | ALT |
|---|---|---|---|
| A188_chr1:5211165-5220046(+) | 19 | C | CT |
| A188_chr1:5211165-5220046(+) | 42 | C | G |
| A188_chr1:5211165-5220046(+) | 66 | C | G |
| A188_chr1:5211165-5220046(+) | 106 | TTTTA | T |
| A188_chr1:5211165-5220046(+) | 193 | C | G |
| A188_chr1:5211165-5220046(+) | 239 | ATATATT | A |
| A188_chr1:5211165-5220046(+) | 310 | G | C |
| A188_chr1:5211165-5220046(+) | 341 | G | GACGGC |
| A188_chr1:5211165-5220046(+) | 396 | long-1981bp | T |
| A188_chr1:5211165-5220046(+) | 2430 | C | CTTCTAAG |
| A188_chr1:5211165-5220046(+) | 2471 | T | C |
| A188_chr1:5211165-5220046(+) | 2477 | A | ACAGCTGAAGCCTGAAGGG |
| A188_chr1:5211165-5220046(+) | 2483 | C | G |
| A188_chr1:5211165-5220046(+) | 2612 | CT | C |
| A188_chr1:5211165-5220046(+) | 2619 | GT | TC |
| A188_chr1:5211165-5220046(+) | 2622 | CTT | TGC |
| A188_chr1:5211165-5220046(+) | 2626 | GCC | TTT |
| A188_chr1:5211165-5220046(+) | 2635 | TT | AA |
| A188_chr1:5211165-5220046(+) | 2646 | A | C |
| A188_chr1:5211165-5220046(+) | 2692 | G | C |
| A188_chr1:5211165-5220046(+) | 2734 | TATCCTATC | T |
| A188_chr1:5211165-5220046(+) | 2767 | T | ACACCATACTCCC |
| A188_chr1:5211165-5220046(+) | 2877 | A | G |
| A188_chr1:5211165-5220046(+) | 2915 | long-59bp | C |
| A188_chr1:5211165-5220046(+) | 3036 | A | G |
| A188_chr1:5211165-5220046(+) | 3049 | A | ACCGG |
| A188_chr1:5211165-5220046(+) | 3088 | C | T |
| A188_chr1:5211165-5220046(+) | 3100 | C | T |
| A188_chr1:5211165-5220046(+) | 3151 | G | A |
| A188_chr1:5211165-5220046(+) | 3152 | CTAG | C |
| A188_chr1:5211165-5220046(+) | 3166 | A | C |
| A188_chr1:5211165-5220046(+) | 3224 | TG | CC |
| A188_chr1:5211165-5220046(+) | 3229 | C | T |
| A188_chr1:5211165-5220046(+) | 3231 | C | T |
| A188_chr1:5211165-5220046(+) | 3245 | AGTTGCGCG | A |
| A188_chr1:5211165-5220046(+) | 3413 | C | CATCG |
| A188_chr1:5211165-5220046(+) | 3436 | C | G |
| A188_chr1:5211165-5220046(+) | 3492 | A | AATT |
| A188_chr1:5211165-5220046(+) | 3494 | GA | AG |
| A188_chr1:5211165-5220046(+) | 3518 | A | G |
| A188_chr1:5211165-5220046(+) | 3537 | GGTGTA | TAC |
| A188_chr1:5211165-5220046(+) | 3544 | C | G |
| A188_chr1:5211165-5220046(+) | 3560 | C | CATCG |
| A188_chr1:5211165-5220046(+) | 3567 | T | C |
| A188_chr1:5211165-5220046(+) | 3588 | GCCGGGTC | G |
| A188_chr1:5211165-5220046(+) | 3597 | A | G |
| A188_chr1:5211165-5220046(+) | 3612 | A | ACATG |
| A188_chr1:5211165-5220046(+) | 3625 | T | C |
| A188_chr1:5211165-5220046(+) | 3637 | T | A |
| A188_chr1:5211165-5220046(+) | 3642 | G | C |
| A188_chr1:5211165-5220046(+) | 3675 | C | CCGG |
| A188_chr1:5211165-5220046(+) | 3690 | C | G |
| A188_chr1:5211165-5220046(+) | 3730 | A | C |
| A188_chr1:5211165-5220046(+) | 3972 | A | C |
| A188_chr1:5211165-5220046(+) | 3997 | GATGCGC | CG |
| A188_chr1:5211165-5220046(+) | 4005 | T | C |
| A188_chr1:5211165-5220046(+) | 4007 | T | C |
| A188_chr1:5211165-5220046(+) | 4008 | GC | G |
| A188_chr1:5211165-5220046(+) | 4057 | C | A |
| A188_chr1:5211165-5220046(+) | 4202 | T | A |
| A188_chr1:5211165-5220046(+) | 4212 | G | A |
| A188_chr1:5211165-5220046(+) | 4235 | G | GTTAA |
| A188_chr1:5211165-5220046(+) | 4265 | CATTAT | C |
| A188_chr1:5211165-5220046(+) | 4301 | C | T |
| A188_chr1:5211165-5220046(+) | 4303 | ACC | TT |
| A188_chr1:5211165-5220046(+) | 4307 | T | C |
| A188_chr1:5211165-5220046(+) | 4312 | G | T |
| A188_chr1:5211165-5220046(+) | 4358 | AGT | G |
| A188_chr1:5211165-5220046(+) | 4377 | G | A |
| A188_chr1:5211165-5220046(+) | 4381 | long-157bp | T |
| A188_chr1:5211165-5220046(+) | 4571 | T | C |
| A188_chr1:5211165-5220046(+) | 4573 | TG | AT |
| A188_chr1:5211165-5220046(+) | 4576 | GC | TA |
| A188_chr1:5211165-5220046(+) | 4578 | ACACT | A |
| A188_chr1:5211165-5220046(+) | 4647 | C | CG |
| A188_chr1:5211165-5220046(+) | 4666 | A | G |
| A188_chr1:5211165-5220046(+) | 4716 | T | A |
| A188_chr1:5211165-5220046(+) | 4771 | G | A |
| A188_chr1:5211165-5220046(+) | 4782 | CG | TATATATATATATATACACACACACACACAC |
| A188_chr1:5211165-5220046(+) | 4785 | TT | CG |
| A188_chr1:5211165-5220046(+) | 4801 | C | T |
| A188_chr1:5211165-5220046(+) | 4806 | TT | GCGCAA |
| A188_chr1:5211165-5220046(+) | 4809 | A | T |
| A188_chr1:5211165-5220046(+) | 4811 | AT | TA |
| A188_chr1:5211165-5220046(+) | 4855 | T | C |
| A188_chr1:5211165-5220046(+) | 4867 | CT | A |
| A188_chr1:5211165-5220046(+) | 4895 | C | G |
| A188_chr1:5211165-5220046(+) | 4913 | A | AAT |
| A188_chr1:5211165-5220046(+) | 4972 | C | T |
| A188_chr1:5211165-5220046(+) | 4978 | C | T |
| A188_chr1:5211165-5220046(+) | 5122 | G | A |
| A188_chr1:5211165-5220046(+) | 5125 | long-349bp | TAG |
| A188_chr1:5211165-5220046(+) | 5481 | A | G |
| A188_chr1:5211165-5220046(+) | 5504 | A | AAAAAGG |
| A188_chr1:5211165-5220046(+) | 5506 | C | G |
| A188_chr1:5211165-5220046(+) | 5509 | G | A |
| A188_chr1:5211165-5220046(+) | 5557 | A | G |
| A188_chr1:5211165-5220046(+) | 5572 | A | AT |
| A188_chr1:5211165-5220046(+) | 5574 | CGTA | TAAC |
| A188_chr1:5211165-5220046(+) | 5585 | A | G |
| A188_chr1:5211165-5220046(+) | 5587 | G | A |
| A188_chr1:5211165-5220046(+) | 5617 | G | C |
| A188_chr1:5211165-5220046(+) | 5628 | TAA | T |
| A188_chr1:5211165-5220046(+) | 5633 | A | G |
| A188_chr1:5211165-5220046(+) | 5670 | T | G |
| A188_chr1:5211165-5220046(+) | 5681 | G | C |
| A188_chr1:5211165-5220046(+) | 5691 | T | C |
| A188_chr1:5211165-5220046(+) | 5696 | A | C |
| A188_chr1:5211165-5220046(+) | 5706 | A | G |
| A188_chr1:5211165-5220046(+) | 5732 | A | AT |
| A188_chr1:5211165-5220046(+) | 5741 | G | T |
| A188_chr1:5211165-5220046(+) | 5747 | C | CTA |
| A188_chr1:5211165-5220046(+) | 5779 | G | C |
| A188_chr1:5211165-5220046(+) | 5783 | TATCATCAA | T |
| A188_chr1:5211165-5220046(+) | 5863 | A | C |
| A188_chr1:5211165-5220046(+) | 5874 | T | C |
| A188_chr1:5211165-5220046(+) | 5882 | CTTGCATTCA | C |
| A188_chr1:5211165-5220046(+) | 5906 | C | CAT |
| A188_chr1:5211165-5220046(+) | 5941 | CCT | C |
| A188_chr1:5211165-5220046(+) | 5950 | T | TTAC |
| A188_chr1:5211165-5220046(+) | 5956 | A | G |
| A188_chr1:5211165-5220046(+) | 5985 | G | C |
| A188_chr1:5211165-5220046(+) | 5987 | T | TTAA |
| A188_chr1:5211165-5220046(+) | 6001 | A | G |
| A188_chr1:5211165-5220046(+) | 6014 | A | T |
| A188_chr1:5211165-5220046(+) | 6026 | C | G |
| A188_chr1:5211165-5220046(+) | 6031 | long-186bp | A |
| A188_chr1:5211165-5220046(+) | 6251 | A | AAATT |
| A188_chr1:5211165-5220046(+) | 6275 | A | C |
| A188_chr1:5211165-5220046(+) | 6280 | G | C |
| A188_chr1:5211165-5220046(+) | 6315 | G | C |
| A188_chr1:5211165-5220046(+) | 6381 | C | T |
| A188_chr1:5211165-5220046(+) | 6384 | A | G |
| A188_chr1:5211165-5220046(+) | 6390 | A | AACGT |
| A188_chr1:5211165-5220046(+) | 6424 | C | A |
| A188_chr1:5211165-5220046(+) | 6430 | TCCATG | T |
| A188_chr1:5211165-5220046(+) | 6457 | TCAGTTTTCCCAGTGTGTAG | T |
| A188_chr1:5211165-5220046(+) | 6490 | G | A |
| A188_chr1:5211165-5220046(+) | 6498 | C | T |
| A188_chr1:5211165-5220046(+) | 6500 | CAGT | C |
| A188_chr1:5211165-5220046(+) | 6508 | C | T |
| A188_chr1:5211165-5220046(+) | 6533 | A | G |
| A188_chr1:5211165-5220046(+) | 6565 | CATAT | C |
| A188_chr1:5211165-5220046(+) | 6578 | T | A |
| A188_chr1:5211165-5220046(+) | 6589 | G | T |
| A188_chr1:5211165-5220046(+) | 6594 | T | C |
| A188_chr1:5211165-5220046(+) | 6596 | C | GCAA |
| A188_chr1:5211165-5220046(+) | 6609 | GTGGACATACAGA | G |
| A188_chr1:5211165-5220046(+) | 6678 | T | TATC |
| A188_chr1:5211165-5220046(+) | 6719 | C | T |
| A188_chr1:5211165-5220046(+) | 6770 | G | GCTA |
| A188_chr1:5211165-5220046(+) | 6790 | T | CGAC |
| A188_chr1:5211165-5220046(+) | 6818 | GTT | G |
| A188_chr1:5211165-5220046(+) | 6831 | C | A |
| A188_chr1:5211165-5220046(+) | 6852 | GATGTATC | G |
| A188_chr1:5211165-5220046(+) | 6883 | C | TG |
| A188_chr1:5211165-5220046(+) | 6894 | AA | GT |
| A188_chr1:5211165-5220046(+) | 6907 | C | T |
| A188_chr1:5211165-5220046(+) | 6919 | AGTAC | A |
| A188_chr1:5211165-5220046(+) | 6944 | A | C |
| A188_chr1:5211165-5220046(+) | 6948 | ATGTGCATC | A |
| A188_chr1:5211165-5220046(+) | 6995 | A | T |
| A188_chr1:5211165-5220046(+) | 6997 | A | G |
| A188_chr1:5211165-5220046(+) | 7010 | A | AAT |
| A188_chr1:5211165-5220046(+) | 7017 | C | T |
| A188_chr1:5211165-5220046(+) | 7039 | T | TCACCATGA |
| A188_chr1:5211165-5220046(+) | 7054 | G | C |
| A188_chr1:5211165-5220046(+) | 7071 | A | G |
| A188_chr1:5211165-5220046(+) | 7080 | G | T |
| A188_chr1:5211165-5220046(+) | 7083 | T | G |
| A188_chr1:5211165-5220046(+) | 7107 | G | A |
| A188_chr1:5211165-5220046(+) | 7149 | C | T |
| A188_chr1:5211165-5220046(+) | 7277 | T | G |
| A188_chr1:5211165-5220046(+) | 7286 | T | A |
| A188_chr1:5211165-5220046(+) | 7288 | AAGAAGAAGCGTTGCTACGTGCG | A |
| A188_chr1:5211165-5220046(+) | 7362 | G | GT |
| A188_chr1:5211165-5220046(+) | 7637 | CCTCGTGTGTGCCA | C |
| A188_chr1:5211165-5220046(+) | 7686 | AAAAGAAAGAAAG | A |
| A188_chr1:5211165-5220046(+) | 7727 | G | A |
| A188_chr1:5211165-5220046(+) | 7729 | TAG | GTA |
| A188_chr1:5211165-5220046(+) | 7733 | A | G |
| A188_chr1:5211165-5220046(+) | 7736 | A | G |
| A188_chr1:5211165-5220046(+) | 7757 | C | ACTGTATCCT |
| A188_chr1:5211165-5220046(+) | 7772 | A | G |
| A188_chr1:5211165-5220046(+) | 7777 | G | GTATGTA |
| A188_chr1:5211165-5220046(+) | 7931 | T | TGCGC |
| A188_chr1:5211165-5220046(+) | 7933 | G | C |
| A188_chr1:5211165-5220046(+) | 7948 | T | G |
| A188_chr1:5211165-5220046(+) | 7950 | A | T |
| A188_chr1:5211165-5220046(+) | 7993 | G | GAT |
| A188_chr1:5211165-5220046(+) | 8111 | TACC | T |
| A188_chr1:5211165-5220046(+) | 8180 | T | C |
| A188_chr1:5211165-5220046(+) | 8210 | T | C |
| A188_chr1:5211165-5220046(+) | 8230 | T | A |
| A188_chr1:5211165-5220046(+) | 8245 | T | G |
| A188_chr1:5211165-5220046(+) | 8277 | C | A |
| A188_chr1:5211165-5220046(+) | 8288 | TA | T |
| A188_chr1:5211165-5220046(+) | 8309 | A | T |
| A188_chr1:5211165-5220046(+) | 8325 | CGCAGCGTACGTACGTA | C |
| A188_chr1:5211165-5220046(+) | 8350 | C | T |
| A188_chr1:5211165-5220046(+) | 8384 | G | A |
| A188_chr1:5211165-5220046(+) | 8386 | G | A |
| A188_chr1:5211165-5220046(+) | 8391 | CACACATCATAGTGATCCG | C |
| A188_chr1:5211165-5220046(+) | 8555 | A | G |
| A188_chr1:5211165-5220046(+) | 8563 | CT | C |
| A188_chr1:5211165-5220046(+) | 8604 | G | A |
| A188_chr1:5211165-5220046(+) | 8607 | G | T |
| A188_chr1:5211165-5220046(+) | 8621 | A | G |
| A188_chr1:5211165-5220046(+) | 8725 | G | A |
| A188_chr1:5211165-5220046(+) | 8734 | A | C |
| A188_chr1:5211165-5220046(+) | 8742 | G | C |
| A188_chr1:5211165-5220046(+) | 8782 | A | G |
| A188_chr1:5211165-5220046(+) | 8793 | G | A |
| A188_chr1:5211165-5220046(+) | 8799 | C | A |
| A188_chr1:5211165-5220046(+) | 8816 | G | A |
| A188_chr1:5211165-5220046(+) | 8821 | C | T |
| A188_chr1:5211165-5220046(+) | 8829 | C | T |
| A188_chr1:5211165-5220046(+) | 8832 | TA | CG |
| A188_chr1:5211165-5220046(+) | 8842 | G | A |
| A188_chr1:5211165-5220046(+) | 8845 | T | C |
| A188_chr1:5211165-5220046(+) | 8853 | TC | CA |
| A188_chr1:5211165-5220046(+) | 8858 | C | T |
| A188_chr1:5211165-5220046(+) | 8860 | A | G |
| A188_chr1:5211165-5220046(+) | 8871 | A | G |
| seqname | pos | REF | ALT |
|---|---|---|---|
| Zm00001eb001720 | 19 | CT | C |
| Zm00001eb001720 | 43 | G | C |
| Zm00001eb001720 | 67 | G | C |
| Zm00001eb001720 | 107 | T | TTTTA |
| Zm00001eb001720 | 190 | G | C |
| Zm00001eb001720 | 236 | A | ATATATT |
| Zm00001eb001720 | 301 | C | G |
| Zm00001eb001720 | 332 | GACGGC | G |
| Zm00001eb001720 | 392 | T | long-1981bp |
| Zm00001eb001720 | 446 | CTTCTAAG | C |
| Zm00001eb001720 | 494 | C | T |
| Zm00001eb001720 | 500 | ACAGCTGAAGCCTGAAGGG | A |
| Zm00001eb001720 | 524 | G | C |
| Zm00001eb001720 | 653 | C | CT |
| Zm00001eb001720 | 659 | TC | GT |
| Zm00001eb001720 | 662 | TGC | CTT |
| Zm00001eb001720 | 666 | TTT | GCC |
| Zm00001eb001720 | 675 | AA | TT |
| Zm00001eb001720 | 686 | C | A |
| Zm00001eb001720 | 732 | C | G |
| Zm00001eb001720 | 774 | T | TATCCTATC |
| Zm00001eb001720 | 800 | ACACCATACTCCC | T |
| Zm00001eb001720 | 921 | G | A |
| Zm00001eb001720 | 959 | C | long-59bp |
| Zm00001eb001720 | 1022 | G | A |
| Zm00001eb001720 | 1035 | ACCGG | A |
| Zm00001eb001720 | 1078 | T | C |
| Zm00001eb001720 | 1090 | T | C |
| Zm00001eb001720 | 1141 | A | GTAG |
| Zm00001eb001720 | 1153 | C | A |
| Zm00001eb001720 | 1211 | CC | TG |
| Zm00001eb001720 | 1216 | T | C |
| Zm00001eb001720 | 1218 | T | C |
| Zm00001eb001720 | 1232 | A | AGTTGCGCG |
| Zm00001eb001720 | 1392 | CATCG | C |
| Zm00001eb001720 | 1419 | G | C |
| Zm00001eb001720 | 1475 | AATT | A |
| Zm00001eb001720 | 1480 | AG | GA |
| Zm00001eb001720 | 1504 | G | A |
| Zm00001eb001720 | 1523 | TAC | GGTGTA |
| Zm00001eb001720 | 1527 | G | C |
| Zm00001eb001720 | 1543 | CATCG | C |
| Zm00001eb001720 | 1554 | C | T |
| Zm00001eb001720 | 1575 | G | GCCGGGTC |
| Zm00001eb001720 | 1577 | G | A |
| Zm00001eb001720 | 1592 | ACATG | A |
| Zm00001eb001720 | 1609 | C | T |
| Zm00001eb001720 | 1621 | A | T |
| Zm00001eb001720 | 1626 | C | G |
| Zm00001eb001720 | 1659 | CCGG | C |
| Zm00001eb001720 | 1677 | G | C |
| Zm00001eb001720 | 1717 | C | A |
| Zm00001eb001720 | 1959 | C | A |
| Zm00001eb001720 | 1984 | CG | GATGCGC |
| Zm00001eb001720 | 1987 | C | T |
| Zm00001eb001720 | 1989 | C | TC |
| Zm00001eb001720 | 2038 | A | C |
| Zm00001eb001720 | 2183 | A | T |
| Zm00001eb001720 | 2193 | A | G |
| Zm00001eb001720 | 2216 | GTTAA | G |
| Zm00001eb001720 | 2250 | C | CATTAT |
| Zm00001eb001720 | 2281 | TTT | CACC |
| Zm00001eb001720 | 2286 | C | T |
| Zm00001eb001720 | 2291 | T | G |
| Zm00001eb001720 | 2337 | G | AGT |
| Zm00001eb001720 | 2354 | A | G |
| Zm00001eb001720 | 2358 | T | long-157bp |
| Zm00001eb001720 | 2392 | C | T |
| Zm00001eb001720 | 2394 | AT | TG |
| Zm00001eb001720 | 2397 | TA | GCCACT |
| Zm00001eb001720 | 2464 | CG | C |
| Zm00001eb001720 | 2484 | G | A |
| Zm00001eb001720 | 2534 | A | T |
| Zm00001eb001720 | 2589 | A | G |
| Zm00001eb001720 | 2600 | TATATATATATATATACACACACACACACAC | CG |
| Zm00001eb001720 | 2632 | CG | TT |
| Zm00001eb001720 | 2648 | T | C |
| Zm00001eb001720 | 2653 | GCGCAA | TT |
| Zm00001eb001720 | 2660 | T | A |
| Zm00001eb001720 | 2662 | TA | AT |
| Zm00001eb001720 | 2706 | C | T |
| Zm00001eb001720 | 2717 | A | CT |
| Zm00001eb001720 | 2745 | G | C |
| Zm00001eb001720 | 2763 | AAT | A |
| Zm00001eb001720 | 2824 | T | C |
| Zm00001eb001720 | 2830 | T | C |
| Zm00001eb001720 | 2974 | A | G |
| Zm00001eb001720 | 2977 | TAG | long-349bp |
| Zm00001eb001720 | 2987 | G | A |
| Zm00001eb001720 | 3010 | AAAAAGG | A |
| Zm00001eb001720 | 3018 | G | C |
| Zm00001eb001720 | 3021 | A | G |
| Zm00001eb001720 | 3069 | G | A |
| Zm00001eb001720 | 3084 | AT | A |
| Zm00001eb001720 | 3087 | TAAC | CGTA |
| Zm00001eb001720 | 3098 | G | A |
| Zm00001eb001720 | 3100 | A | G |
| Zm00001eb001720 | 3130 | C | G |
| Zm00001eb001720 | 3141 | T | TAA |
| Zm00001eb001720 | 3144 | G | A |
| Zm00001eb001720 | 3181 | G | T |
| Zm00001eb001720 | 3192 | C | G |
| Zm00001eb001720 | 3202 | C | T |
| Zm00001eb001720 | 3207 | C | A |
| Zm00001eb001720 | 3217 | G | A |
| Zm00001eb001720 | 3243 | AT | A |
| Zm00001eb001720 | 3253 | T | G |
| Zm00001eb001720 | 3259 | CTA | C |
| Zm00001eb001720 | 3293 | C | G |
| Zm00001eb001720 | 3297 | T | TATCATCAA |
| Zm00001eb001720 | 3369 | C | A |
| Zm00001eb001720 | 3380 | C | T |
| Zm00001eb001720 | 3388 | C | CTTGCATTCA |
| Zm00001eb001720 | 3403 | CAT | C |
| Zm00001eb001720 | 3440 | C | CCT |
| Zm00001eb001720 | 3447 | TTAC | T |
| Zm00001eb001720 | 3456 | G | A |
| Zm00001eb001720 | 3485 | C | G |
| Zm00001eb001720 | 3487 | TTAA | T |
| Zm00001eb001720 | 3504 | G | A |
| Zm00001eb001720 | 3517 | T | A |
| Zm00001eb001720 | 3529 | G | C |
| Zm00001eb001720 | 3534 | A | long-186bp |
| Zm00001eb001720 | 3569 | AAATT | A |
| Zm00001eb001720 | 3597 | C | A |
| Zm00001eb001720 | 3602 | C | G |
| Zm00001eb001720 | 3637 | C | G |
| Zm00001eb001720 | 3703 | T | C |
| Zm00001eb001720 | 3706 | G | A |
| Zm00001eb001720 | 3712 | AACGT | A |
| Zm00001eb001720 | 3750 | A | C |
| Zm00001eb001720 | 3756 | T | TCCATG |
| Zm00001eb001720 | 3778 | T | TCAGTTTTCCCAGTGTGTAG |
| Zm00001eb001720 | 3792 | A | G |
| Zm00001eb001720 | 3800 | T | C |
| Zm00001eb001720 | 3802 | C | CAGT |
| Zm00001eb001720 | 3807 | T | C |
| Zm00001eb001720 | 3832 | G | A |
| Zm00001eb001720 | 3864 | C | CATAT |
| Zm00001eb001720 | 3873 | A | T |
| Zm00001eb001720 | 3884 | T | G |
| Zm00001eb001720 | 3889 | C | T |
| Zm00001eb001720 | 3892 | GCAA | C |
| Zm00001eb001720 | 3907 | G | GTGGACATACAGA |
| Zm00001eb001720 | 3964 | TATC | T |
| Zm00001eb001720 | 4008 | T | C |
| Zm00001eb001720 | 4059 | GCTA | G |
| Zm00001eb001720 | 4083 | CGAC | T |
| Zm00001eb001720 | 4113 | G | GTT |
| Zm00001eb001720 | 4124 | A | C |
| Zm00001eb001720 | 4145 | G | GATGTATC |
| Zm00001eb001720 | 4169 | TG | C |
| Zm00001eb001720 | 4181 | GT | AA |
| Zm00001eb001720 | 4194 | T | C |
| Zm00001eb001720 | 4206 | A | AGTAC |
| Zm00001eb001720 | 4227 | C | A |
| Zm00001eb001720 | 4231 | A | ATGTGCATC |
| Zm00001eb001720 | 4270 | T | A |
| Zm00001eb001720 | 4272 | G | A |
| Zm00001eb001720 | 4285 | AAT | A |
| Zm00001eb001720 | 4294 | T | C |
| Zm00001eb001720 | 4316 | TCACCATGA | T |
| Zm00001eb001720 | 4339 | C | G |
| Zm00001eb001720 | 4356 | G | A |
| Zm00001eb001720 | 4365 | T | G |
| Zm00001eb001720 | 4368 | G | T |
| Zm00001eb001720 | 4392 | A | G |
| Zm00001eb001720 | 4434 | T | C |
| Zm00001eb001720 | 4562 | G | T |
| Zm00001eb001720 | 4571 | A | T |
| Zm00001eb001720 | 4573 | A | AAGAAGAAGCGTTGCTACGTGCG |
| Zm00001eb001720 | 4625 | GT | G |
| Zm00001eb001720 | 4901 | C | CCTCGTGTGTGCCA |
| Zm00001eb001720 | 4937 | A | AAAAGAAAGAAAG |
| Zm00001eb001720 | 4966 | A | G |
| Zm00001eb001720 | 4968 | GTA | TAG |
| Zm00001eb001720 | 4972 | G | A |
| Zm00001eb001720 | 4975 | G | A |
| Zm00001eb001720 | 4997 | ACTGTATCCT | C |
| Zm00001eb001720 | 5020 | G | A |
| Zm00001eb001720 | 5025 | GTATGTA | G |
| Zm00001eb001720 | 5185 | TGCGC | T |
| Zm00001eb001720 | 5191 | C | G |
| Zm00001eb001720 | 5206 | G | T |
| Zm00001eb001720 | 5208 | T | A |
| Zm00001eb001720 | 5251 | GAT | G |
| Zm00001eb001720 | 5371 | T | TACC |
| Zm00001eb001720 | 5437 | C | T |
| Zm00001eb001720 | 5467 | C | T |
| Zm00001eb001720 | 5487 | A | T |
| Zm00001eb001720 | 5502 | G | T |
| Zm00001eb001720 | 5534 | A | C |
| Zm00001eb001720 | 5545 | T | TA |
| Zm00001eb001720 | 5565 | T | A |
| Zm00001eb001720 | 5581 | C | CGCAGCGTACGTACGTA |
| Zm00001eb001720 | 5590 | T | C |
| Zm00001eb001720 | 5624 | A | G |
| Zm00001eb001720 | 5626 | A | G |
| Zm00001eb001720 | 5631 | C | CACACATCATAGTGATCCG |
| Zm00001eb001720 | 5777 | G | A |
| Zm00001eb001720 | 5785 | C | CT |
| Zm00001eb001720 | 5825 | A | G |
| Zm00001eb001720 | 5828 | T | G |
| Zm00001eb001720 | 5842 | G | A |
| Zm00001eb001720 | 5946 | A | G |
| Zm00001eb001720 | 5955 | C | A |
| Zm00001eb001720 | 5963 | C | G |
| Zm00001eb001720 | 6003 | G | A |
| Zm00001eb001720 | 6014 | A | G |
| Zm00001eb001720 | 6020 | A | C |
| Zm00001eb001720 | 6037 | A | G |
| Zm00001eb001720 | 6042 | T | C |
| Zm00001eb001720 | 6050 | T | C |
| Zm00001eb001720 | 6053 | CG | TA |
| Zm00001eb001720 | 6063 | A | G |
| Zm00001eb001720 | 6066 | C | T |
| Zm00001eb001720 | 6074 | CA | TC |
| Zm00001eb001720 | 6079 | T | C |
| Zm00001eb001720 | 6081 | G | A |
| Zm00001eb001720 | 6092 | G | A |
o Query sequence from B73
>Zm00001eb001720
TCGACGAGAGGGGCGGAGCTTTGTGTTATGTGGTGTCGCTCCGAGAGGCTTCGGCCAATAGTAAAAGTACAGCGCATTTCAGGACGAATTATACGGTATGTTTTTTTAAAAAAAATCAGATACATAATGAAACGAACGAATACAATATTTTACGCGTGCGTGGGCACGCGTAAGGACCGGAAAATGTAGGAGACAAGCAAGCAAAAAAGAGTGCTATATTATACTAAAAGTTTTGATATATATATACATACATATAGGCATACAGCCGGCGGCAGCGTGTACGTCATTGTCCGTCTGTTACGATATGATCAGACAAAGCAGCTACAGCCGGGACGGCCCGGGCCCGCCACGGCGACTACACGCACACGGCGGCCCAACTAATACCAATATATATAATACTACGCCTAAATAATCCGATGCGATTAACGCCCACTGATGATGCATCCTTCTAAGTTCTAATGCTTCCTTAAGTACGTAGCTTGCCTGCCAGCATCCAGCCACAGCTGAAGCCTGAAGGGCAGTCGATGTAAAAGGCAAGAATAATGCAGGTCCACCGAGACGACGGCGGCGGCGCGGTGACGACGATGCAACAGCAGCAGACGCCCGTTCCCGGCGCCAACCGCAAGGTTGGTAGAGGCAACCGAAGGCGCCCCCCTCCTCCTGCTTTTTTTTTTAAAAAAAAAAACCCGCCACCACCCAAAGTATTTCTTGAAACCAACTCCTAATTATTCCATCGAATTACCAAATGTATGTGCAACTAACCTCCTACAGTATATCCTAAAGTTTGTACCGCACTTCTACACCATACTCCCCGCCTACTCATAGTAGGAAACGCATTGGTGCAACTCTTGGTAGCTAGCTGTAGGTACTAGGCACCTTGCTCTTGCTTTAGTTGTTCCTCTTCCTCTTTGGGCATGCTTGGATTCCAAAGCTTCACCACCCTCCCTCACCTCCACTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCATCTCGCCTTTCTTTCTTACCGGCCGGCCGGCCGGCGGCTGGGCTCTGCAATTCACCCAACTTTTCTCTGTTTTCACTACGATCTCAGGGCTCCGGCGACCGTGCGGCCTCATCATCAGCTACAACCTACCAGCTGCTACCGTCTCGGTCGCCGCCTAGCTCTCCGCAGCGGCTAGCTCATCCGGCCGGCCGCCCCTTTTCTCTTGCCGTTGCGCAGTTGCGCCCCCTTCCCCGCGGCTTAGGAACCATCGAAAAGACGCCTCACCATCTCCTTTGTGTCCTTGCTAACTAACTCCCCCATTAAATCCTCTCCTTCCTCCCGCGCTGGCCGTGTGGTCTCTCAGCCCTCCGAGTTGATCCATAAGCTAGCGCCATCATCGATCGCCATATATACATAGCCAAGGACGCACGCGCGCGCGCGCGCAAACCAGCGGGAGCGAACACCAACCGGCCGGACCAATTAAGAAGCAGGCTAGCAAGTCGAAGAGGAAAGAAGAGAAGGGGGGTACCGGGGGTACCGGCCGGTCATCGATCGAGCTTGGCGAAGCAGCGACCGCCGGGTCGTCGTCGTCGGTACATGCATGCAGCGCGGCGGTGATCAAGCAGGAGCGAGCCTGGGCATGGAGATGGGGGTGGGGTACGCCGGCGGCGGCGGCGGCGGCGAGTGCTCGTCGTCCTCGGCGGCTGCCGCGGCCGCGGCCGCGGCGGAGGGGGAGGAGCGGCAGCTGCTCAAGGGGGAGATCGCGGTGCACCCGCTGTGCGAGCAGCTAGTGGCGGCGCACGTGGGGTGCCTGCGCGTGGCCACGCCCATCGACCACCTCCCCCTCATCGACGCCCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCCCACCACCGCCCCTTCCTCTCCCCGCACGACAAGCACGACCTCGACTCGTTCCTCGTACGACCTCCTGCTACCACGATTGCTAGCTATGCCGCCACGCGCCACACATATGCATGCATGAGCCGCTGACCGGTTTCTTCTTCTTCATCTGCATGCATGCATGGCGGTGGTGCAGGCGCAGTACCTGATGCTGCTGTGCTCGTTCCGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAGTCCCTGCAGGACCTAACCGGTAAGACCCTGCGTCCATGTTTCATGCCGTTAATTATTTGTTACTTCCATTAATTGTGGTTCCATTTGCGCAAGCTTTTGGGTGTTGTTTTTTTCTTCCCCAATATTTGCCTGTCCGATCCATCCGCCGTGCCTTTTCTCGTTGCAGCCGGTGGTACCGCACCCTCACTATTTCTTTAATTTGATGGTTGATGCATGCCTGTAACAATATAAGCACACAAAGGTAATATTAGTTGTAGCGTCGTCTTCCATGGTCATTACGCATCTCTGATCTGCTCGGGTGTGTGCGTGTGTGTTGTGTTGGTTGCGTCTTGAGGCTTTTCCTCAACCCTTGCCATCTCTACGTGACTATGTTAGGAAAAACAAACTCGAAGAACACATGGAAAAGGAAACGTAACTTATATATATATATATATATATATATATATACACACACACACACACACGATTCTCTTTGCGCATAAATGCGCAAATTTAATATAGACCCTTGGTTCAACAACCAACAACTGATATGTTTTACCTAAAAAAAAAATCCATGCTCTCATCTCTCGCGGCCAGGTGTAAATTTGCACCCAAAATAAAAAACGTGTGCTCAGTCGTTGATTGTTAACCAAAGGGTCTAGATTGAATCTGTGCATTTGCGTACGAATGGGGGTCTTGTGTATATAGGATACGTTCCCCACGAAAAAAATCCATACTTTGGGCGTAATTTTTTCGCTCACGGTTTTATTTATGGGTTATTGTCAATAGTTATTCAACAAAGACCAAAATTCCCACAATAAATTAAAGCTAGTAGGAGTGCCCAATACTAGTTCCTAAAAAAAAAAAGGAGCTACAAAAGAGGTTTCAAGGAATACCAACCAAGAGGGTTGGCATACAGTAGCGATGGAGTCATATATATAACGTACACTGGACATTTTTTCTGCAGTTGCTTCACTAAGAGCAACAAGATCATAAGAAAGTACAATTTTCTTACATCCCATTTATCAGGGGGGAAAATCGATACTCTGTCGTTCTCAGCAGCAAATTTGGTTTGTTGGGTATATTTGTAGTTCGATTTCCCTGTTTGAATCTATATCATTAATCGAAAAGTTATCAGCTAGTTACAGGTCACCATGATTTGAACATGAACTACCCATCAGTCAGTCCATCACCATAGGCCACATACCCCTTGATTTATTACGTGACACGACCCCCTCCCCTTGGTGGTCGTCCTCATATATAATGAGAAATCAGAACATACTTTTGCACTCCCTGGACTTACTACTAGCTAGTGCCGTAGTGCGACACATATACAACATTAATAATCACGCATCGGAAAAAGGAAATATTACAACATACAGTACAACTAAGCAGAACACGTTGTCCAACCCTAAACATGGAAATTAACTTATCTTTCAGCTGTGACTCCAAGGCTATTAGGTCATGTCGCAGGTAGTGTTCAATTGATCAATTCTGCAACACTTAATGCCGTTCCAGTTAAGGTTTTAGGTTTTAAGAGTCGTCACCGTTTTACTGCGCCTCCAACGTACGTACTTCAGGATTATATATGCAGTTTAAGCCAATGCATCCCATGATCCTGTCACTTGATTCCCAGCTCTTCCGAACACGCGTGCAGTATCGTTGCTTTTAGCGACTACCTGCCGAAATTCCAAAAGTGTCTAGATCTAGCATACACATATGTTTAATCAGGTGCTTCTTCCTCGCAATCGCAATGCAAGTGTCTCTTTAGGCAGCTGCATGCTGGGTTCATTCTCATGCACGTTCCCGACGGCGATATCTCATGCATGCACTGTCTCTCTCGACTCCTCACGTCCCGGCTTTCGTTCATGCGTGCATGTCTGCGTGTTGTCTAGATCACGGATCACTGCTGCTACTACTTGTGGTTGTGTGGTCCGACGAACTGGTCGACGAGGAATTTTCCATGTTAGCAAGGCAATCGAGGATTTTGTTTAGATGATGTATGTTGAAGTGGATTGAGGTGGAAACTGAAAGTGTTTTTCACTCTAATTCACTCTAAGTATATGAACTGAGAACAATCCATATAAACAAAGTCTAACATGATTTGTTTTTTTGGAAAAGTTCGTCGTCGCTGACAAATTTTTTTTTACTGAAAGATGTTGTTCATGTCACCATGACACCATGTGCGTATCTGTATAAATATGTAGGGGCGACACTTGAGGAAGGGACGGGGGCGACCATGTCAGAGGACGAGGACGAGGCGCCGATGCTGGAGGTGGGCCTGGATATGGGCTCCGACGGGCACGACATGATGGGCTTCGGCCCGCTCATGCCCACCGACTCGGAGCGCTCGCTCATGGAGAGGGTCAGGCAGGAGCTCAAGATGGAGCTCAAGCAGGTTAAAAAAGAGACTAGGGAGAAGAAGACGTGCAATTAATGCATGCTGTAGGTTGATGTGAAGTCTTTGTCGGAATTTGGTTTGCAGGGTTTCAAGTCGAGAATAGAGGATGTGCGGGAGGAGATCCTGAGGAAAAGGAGGGCCGGGAAGCTGCCTGGGGACACCACCAGCATCCTCAAGCAATGGTGGCAGGAGCACTCCAAGTGGCCATACCCCACGGTGAGTGCATTGTAGCTTTCATGCAAGAATGCAACCAGCCATCTGCATACACTGATGGTGTGGTGTGGTGTGGTCGCCCTTCTTAGCTGTTCTCCATATTATATCCAGCAGCTTCCTGATGAAGCTCGCTGGCATTCCTTAATTATTATGCGGTTGTTAAATGAGTTCTTAGAAAAGAAAGAAAGAAAGCAATAAAGAAAAAGGTAGGAAGAAAGATGTGTGGTTTGTAAAGACTGTATCCTAATTAAAGACTGTGTCGTGTATGTATTTGGGTGGCTGGTACAGGAAGACGATAAGGCTAAGCTCGTCGAAGAGACCGGCCTGCAGCTGAAGCAAATCAACAACTGGTTCATCAACCAGAGGAAGAGGAACTGGCACAACAACTCCCAGACGTCAACCCTCAAATCGAAGCGTAAAAGGTGCGCGCCCAATAATAATAATGCTCGCTAGCGCTCATCCACCACTGCATGATTATTTATTTAATTAGATATACTCATGTACTAACAGATGCATGTGTATCTGCACTGCAGGTGATGGAGGAGAGCTAGCTGCACCGTATATACCGTGTATGTAACGCACACCTGCTGACACACATGTACACATGTATACCATACCAACACGCTAATCAAACGGAGCTCTGCATGGCGACTGTACTCACGGAAATAAAGAGGACCATATCGACCGGTTCAACTGTATATCTAGCCATTAGTCTGACCACTGGCATATTTGTTTGCTGCGGCTGATACTTTGAGCTGATGATGTGTGGCTCACAGCATACTTTATTCTTGTTCTTATTGTGTTGACATAGTTTGTCCCCCATAATCTTGAGGATTAAAAAATGCATCCCCTGTGCGCGCGCACACACACATCTGACCATCATCTGCTGGCACAGGAAGAAAAGAACAGAGGTTGCATTCACGCTTGTCTGCTCAATTTCAGAAAATGCGGTAGCTATAGCTACGCCGATCATGTTGGCGCAACACCATTGGGACGGCTGCTACGTGGACCAGATGTGTGGGCCTTGCGTCGTCGATTAGTTAGGTGTACCCAATTGAAACTGAACTACAGCCCGGTGGAGATTTATTGGGCGATTAGGCCTAACCAACACCACAAAAGACAAACGAAATGCTGGAGCTGGTGGCAGCAAGCCTCTCGTAACAGTCCCAGCGTTTCTCCGGCGCAGCGCATGCCTAACGAGCGATACCGGCCGGTTCCGAATGTTGAATTAACGTGGTCCTGGCCCAAATTAATATTCAATAGTCAATACTAAAGACACATTTTAATATTACGGTGTACTAATACTTTAATACAATATCGGAAGTACAAGGGACAATTCAATo Target sequence from A188
>A188_chr1:5211165-5220046(+)
TCGACGAGAGGGGCGGAGCTTGTGTTATGTGGTGTCGCTCCCAGAGGCTTCGGCCAATAGTAAAACTACAGCGCATTTCAGGACGAATTATACGGTATGTTTTTTTTTTAAAAAAAAATCAGATACATAATGAAACGAACGAATACAATATTTTACGCGTGCGTGGGCACGCGTAAGGACCGGAAAATGTAGCAGACAAGCAAGCAAAAAAGAGTGCTATATTATACTAAAAGTTTTGATATATTTATATATATACATACATATAGGCATACAGCCGGCGGCAGCGTGTACGTCATTGTCCGTCTGTTAGGATATGATCAGACAAAGCAGCTACAGCCGGGCCGGGCCCGCCACGGCGACTACACGCACACGGCGGCCCAACTAATACCAATATATATATAATACTAGATATATGCTCGTGCGTTGCAACGGGGGACACTTGTGCATACATAGATTATTGTTTAGTGATGCTATCAAGAATCAACTTAACAATCATAACAAATGTCGAAATCAGTCATTTTGAACAACCAAAATTTGGCTCAATGTAACTATTAATCAAAATAGGTAAATCCTAAGTTGAATACATTATATGGTGATATACCATGACTTCCATAGAACAATTTTGCATTGTATGGTAAAAATTATAAAAGGAGATCCTATGCCTATCGAAAGGAGATGGTGAGTTGTGACTATAAAAATTATTTTAGCTCACAAATATGGCCCTCTTATCTTTTTATGTTGTGGGGAAATATGTTGTAGCGTGATTTTTACATTACTTACATAAAGACAAGTAATATGACAATATTTAACCCATCTAAAGACGAATTCTCTAAAACAAGGTTTCCTTACATAGACCATGAGGCAACCATATCATTTGTATTGCAGGGCAGCCGACAACATTTAGAGAAATAAATACATAATGTGTTGGACATAGCTAGTTAAATGATTAGGATGACATTTCACTATTAAAACCAACAATCAGTGCCATCTTTTGCATAGATCAAACAACCACGTCAATTTGTTTATGCAAATTGTTAACTACTATGAATTTACCTGTGAGGTTCTCAACTACATAGTTTTGTGGACTCGGAGACATGCTCGGTCGGCCAGAACCATTGTGCTAACGTTGATGCCGGGAGGAATTCACCGAGCTTAGGCCGACAAAAGAGACAAAGTACAATCCAAGTCAAGCACAGCGAGTCAACCGTCAGAGAACATTTTGTCGCTAGTGAGGCTATCTTGAGGAGAGGCAGCTGCCCGAGGCTACTCGGCACCTCCGATGCGATCGCTAGTAAAACTTATTTCACGCTCCTATAGGAAAGGGAAGAGACAACATTCTTTCGCATAAAGTTCTGAACCGATGGCTATGAACTATTCTAAAAATTGACTTGCTAATTTGCATATGAATATATATTTCATTAAGATGTGAAAACAATTTGCAAGTATGTGTGATATGTTGCTTGACTAAACGAATTGACCAATCTATATTTTTCGGTACAAAATGACTAAAAATAAGTTATCATAGTTATAATTGATATTAAAGGCAAAGAAAATCATATAAATTATCGAGGTAGCAAACTCACGTAAAAAAAGTGTCATAGTTGGCCTGAACATGGCCCCGTTTTAATTTTTCCTCTATTTTTTCATAAAAGTCTCTATATTATACTTGAGTATAAAGTATAAAACAAAAATATGTGTGTTCGGTGGCTAGGTGTGGATGTGAATACGAGTTTAAATCAAACAACCATAGTTCAAATGCGAGTTACATTTACATATATTTTATCTTATGTTTACTGTTGGTTCCTACAAATTGTCCAAACACACATGCTGATAAGGGTATTTATTTTAACATTTAATTCCACCGGCTATCAAACATATGCTTTATCACTTGCATGCTCACAAGGAGACTTTACATGCACGAATGAGCACATGCAAGCTTTGGATGCAGTGGAGACGTTTGCATGCACGGTTGCATGCGTCGGTTTAGTTGCATACTTGTATGCGGTGTGGGGGTTTAACGGTTTTGTGCGTGTGAGACTGAGCATGTTGCATGCATGGCCACGCGTCGGGTCCCTTGCATGCGCGCAAAGGACAGGGGCGGGGCACAGTTGTGGTCTACATTAGCTTTTTAATAGATAGTAGAGATTTTACCGTTTGGTTTCTACAAACTGTCCAAACACATGTGTTGATAAGGGCATTTATTTTTAACATTTAATTCCACATGCCATCGAACACATGCTCTATCACTTTATGCTCACAAGCTACAGTGGAGGCATTTGCATGCATAGTTACATGCGCCAGATTACTTGCATGCGTCAAGGATGAGGGGTGGGGGCACGGATATGGTCTACAATAGCTTCTTAATAGATAGTAGAGATAATACTACGCCTAAATAATCCGATGCGATTAACGCCCACTGATGATGCATCCTTCTAATGCTTCCTTAAGTACGTAGCTTGCCTGCCAGCATTCAGCCACAGTCCATGTAAAAGGCAAGAATAATGCAGGTCCACCGAGACGACGGCGGCGGCGCGGTGACGACGATGCAACAGCAGCAGACGCCCGTTCCCGGCGCCAACCGCAAGGTTGGTAGAGGCAACCGAAGGCGCCCCTCCTCCGTCCTTTGCCTTTTTTTTAAAAAAAAAACCGCCACCACCCAAAGTATTTCTTGAAACCAACTCCTAATTATTCGATCGAATTACCAAATGTATGTGCAACTAACCTCCTACAGTATATCCTATCATCCTAAAGTTTGTACCGCACTTCTTCGCCTACTCATAGTAGGAAACGCATTGGTGCAACTCTTGGTAGCTAGCTGTAGGTACTAGGCACCTTGCTCTTGCTTTAGTTGTTCCTCTTCCTCTTTGGGCATGCTTAGATTCCAAAGCTTCACCACCCTCCCTCACCTCCACTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCATCTCACCTTTCTTTCTTACCGGCCGGCCGGCGGCTGGGCTCTGCAATTCACCCAACCTTTCTCTGTTTCCACTACGATCTCAGGGCTCCGGCGACCGTGCGGCCTCATCATCAGCTACAGCTAGCTACCAGCTGATACCGTCTCGGTCGCCGCCTAGCTCTCCGCAGCGGCTAGCTCATCCGGCCGGCCGCCTGTTTCCCCTTGCCGTTGCGCAGTTGCGCGGTTGCGCCCCCTTCCCCGCGGCTTAGGAACCATCGAAAAGACGCCTCACCATCTCCTTTGTGTCCTTGCTAACTAACTCCCCCATTAAATCCTCTCCTTCCTCCCGCGCTGGCCGTGTGGTCTCTCAGCCCTCCGAGTTGATCCATAAGCTAGCGCCATCATCGCCATATATACATAGCCAACGACGCACGCGCGCGCGCGCGCAAACCAGCGGGAGCGAACACCAACCGGCCGGACCAAGAAAGCAGGCTAGCAAGTCGAAGAAGAAAGAAGAGAAGGGGGGGGTGTACCGGGGTACCGGCCGGTCATCGAGTTTGGCGAAGCAGCGACCGCCGCCGGGTCGATCGTCGTCGTCGGTACATGCAGCGCGGTGGTGATCAAGCTGGAGGGAGCCTGGGCATGGAGATGGGGGTGGGGTACGCCGGCGGCGGCGGCGCCGAGTGCTCGTCGTCCTCGGCGGCTGCCGCGGCCGCGGCAGCGGCGGAGGGGGAGGAGCGGCAGCTGCTCAAGGGGGAGATCGCGGTGCACCCGCTGTGCGAGCAGCTAGTGGCGGCGCACGTGGGGTGCCTGCGCGTGGCCACGCCCATCGACCACCTCCCCCTCATCGACGCCCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCCCACCACCGCCCCTTCCTCTCCCCGCACGACAAGCACGACCTCGACTCGTTCCTCGTACGACCTCATGCTACCACGATTGCTAGCTATGCGATGCGCCTATGCCGCCACACATATGCATGCATGAGCCGCTGACCGGTTTCTTCTTCTTCCTCTGCATGCATGCATGGCGGTGGTGCAGGCGCAGTACCTGATGCTGCTGTGCTCGTTCCGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAGTCCCTGCAGGACCTTACCGGTAAGGCCCTGCGTCCATGTTTCATGCCGTTATTTGTTACTTCCATTAATTGTGGTTCCATTATATTTGCGCAAGCTTTTGGGTGTTGTTTTTTCCACCCTCCAAGATTTGCCTGTCCGATCCATCCGCCGTGCCTTTTCTCGTTGCAGCCAGTGTGGTACCGCACCCTCGCTATTTCTTTAGGGCTTGTTCGGTTCTACCCCAATCCATATGGATTGAGGGGATTGAGGGGGTTTCAATCCCTAGTAAGTCAAAATTCCCTCCAATCCGTATCAATCCCCTCCAATCCATATGGATTGAAAATAACCGAACAAGCCCTTAATGGGATTCCTTCTTTAATTTGATGGTTGATGCATGCCTGTAATATGAGCACACTGCACACAAAGGTAATATTAGTTGTAGCGTCGTCTTCCATGGTCATTACGCATCTCTGATCTGCTCGGTGTGTGCGTGTGTGTTATGTTGGTTGCGTCTTGAGGCTTTTCCTCAACCCTTGCCATCTCTACGTGTCTATGTTAGGAAAAACAAACTCGAAGAACACATGGAAAAGGAAACGTAACTTATGTATATATATACGATTATTCTCTTTGCGCACAAATTTAATATATATAGACCCTTGGTTCAACAACCAACAACTGATATGTTTTATCTAAAAAAAAACTTCCATGCTCTCATCTCTCGCGGCCAGCTGTAAATTTGCACCCAAAAAAAAACGTGTGCTCAGTCGTTGATTGTTAACCAAAGGGTCTAGATTGAATCTGTGCACTTGCGCACGAATGGGGGTCTTGTGTATATAGGATACGTTCCCCACGAAAAAAATCCATACTTTGGGCGTAATTTTTTCGCTCACGGTTTTATTTATGGGTTATTGTCAATAGTTATTCAACAAAGACCAAAATTCCCACAATAAATTAAGGCCCCGTTTGGTTAATTTAGTCCATGGACTAAAGTTTAGTTAAGAGACTAAAATTTAGTCCCTACCCTGTTTGGTGATAGGAACTAAACTATGCAAAACATATTAAATAAATCATAAGAGGACTAAAATATCCCTTAACATTCTCCTACCATGAGTGCAACTAAAATTAGGAGGGGCAAAAAGTAGAATTTATATGGTTTAGTCCTCTTTAGTCACCACTTGAGAGACTAGAGACTAAAAAAGTTTAGTTCCAATTTTAGTCCTACCGTTTAGCAATTTAGGGACTAAATGAGACTAAAATAGAGGGACTAATCTTTAATTCCTCAAACCAAACGGGGCCTAAAGCTAGTATAGGAGTACCCAATACTAGTTCCTAAAAAAAACCTGCAAAAGAGGTTTCAAGGAATACCAACCAAGAGGGTTGGCATACAGTAACGATGGAGTCATATAACGTAGTACACTAGGCATTTTTTCTGCAGTTGCTTCACTAAGAGGAACAAGATCATAAAAAAAAGTACAATTTTCTTACATCCCATTTATCAGGGGGTAAAATCGATAGTCTGTCGTTTTCAGAAGCAAATTTAGTTTGTTGGGTATATTTGTAGTTCGATTCCCTGTGTGAATCTATCATTAATCGAAAAGTTATCAGCTAGTTAGAGGTATCATCAACACCATGATTTGAACATGAACTACCCATCAGTCAGTCCATCACCATAGGCCACATACCCCTTGATTTATTAAGTGACACGACTCCCTCCCCTTGCATTCATTGGTGGTCGTCCTCATATAATGAGAAATCAGAACATACTTTTGCACTCCCTCTGGACTTACTAACTAGTGCCGTAGTGCGACACATATACAAGATTAATCACGCATCGAAAAAAGGAAATAATACAACATACACTACAACTAGGGTCTGTTTGGACCCCACATATTTTTTAAGAAACTTATTTATAAAAACTAAGAGGTAGTTCCAAACATACCAGTCTATGTCTCAGTTTATAAAAATTGGATTTTAAAAATAAAAAAGCTAGCCTCTTCTAGCTAAAAAATAAAACTGGTTTCTTAAAAACTGGGTAGCTTCCAAACAGGACCTAAGCAGAACACGTTGTCCAACCCTAAACATGGAAACTTATCTTTCAGCTGTGACTCAAAGGGTATTAGGTCATGTCGCAGGTAGTGTTCAATTGATGAATTCTGCAACACTTAATGCCGTTCCAGTTAAGGTTTTAGGTTTTAAGAGTCGTCACCGTTTTACCGCACCTCCAACGTACTTCAGGATTATATATGCAGTTTAAGCCCATGCATCCATGCCCATGATCCTGTCACTTGATTCAGTTTTCCCAGTGTGTAGCCCAGCTCTTCCGGACACGCGCGCAGTAGTACCGTTGCTTTTAGCGACTACCTGCCAAAATTCCAAAAGTGTCTAGATCTAGCATACACATATATATGTTTTATCAGGTGCTGCTTCTTCCTCGCAATGCAAGTGGACATACAGATGTCTCTTTAGGCAGCTGCATGCTGGGTTCATTCTCATGCACGTTCCCGACGGCGATTCATGCATGCACTGTCTCTCTCGACTCCTCACGTCCCGGCCTTCGTTCATGCGTGCATGTCTGCGTGTTGTCTAGATCACGGATCACTGCTGCTACTTGTGGTTGTGTGGTCTGAACTGGTCGACGAGGAATTTTCCATGTTTTAGCAAGGCCATCGAGGATTTTGTTTAGATGATGTATCATGTATGTTGAAGTGGATTGAGGCGAAACTGAAAAAGTTTTTCACTCCAATTCACTCTAAGTACGTATATGAACTGAGAACAATACATATGTGCATCTAAACAAAGTCTAACATGATTTGTTTTTTTGGAAAAGTACATCGTCGCTGACAATTTTTTCTACTGAAAGATGTTGTTCATGTCACCATGTGCGTATGTGTATAAATATGTAGGAGCGACACTGGATGAAGGGACGGGGGCGACCATGTCGGAGGACGAGGACGAGGCGCCGATGCTGGAGGTGGGCCTGGACATGGGCTCCGACGGGCACGACATGATGGGCTTCGGCCCGCTCATGCCCACCGACTCGGAGCGCTCGCTCATGGAGAGGGTCAGGCAGGAGCTCAAGATGGAGCTCAAGCAGGTTAAAAAAGAGACTATGGAGAAGATGAAGAAGAAGCGTTGCTACGTGCGCGTGCAATTAATGCATGCTGTAGGTTGATGTGAAGTCTTTGTCGGAATTTGGTTGCAGGGTTTCAAGTCGAGAATAGAGGATGTGCGGGAGGAGATCCTGAGGAAAAGGAGGGCCGGGAAGCTGCCTGGGGACACCACCAGCATCCTCAAGCAATGGTGGCAGGAGCACTCCAAGTGGCCATACCCCACGGTGAGTGCATTGTAGCTTTCATGCAAGAATGCAACCAGCCATCTGCATACACTGATGGTGTGGTGTGGTGTGGTCGCCCTTCTTAGCTGTTCTCCATATTATATCCAGCAGCTTCCTGATGAAGCTCGCTGGCATTCCTCGTGTGTGCCACTTAATTATTATGCGGTTGTTAAATGAGTTCTTAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAATAAAGAAAAGGTAGGAAAAAAAGATGTGTGGTTTGTAAAGCAATTAAAGACTGTATCGTGTTTGGGTGGCTGGTACAGGAAGACGATAAGGCTAAGCTCGTCGAAGAGACCGGCCTGCAGCTGAAGCAAATCAACAACTGGTTCATCAACCAGAGGAAGAGGAACTGGCACAACAACTCCCAGACGTCAACCCTCAAATCGAAGCGTAAAAGGTGGCCAATAATAATAATTCACGCTAGCGCTCATCCACCACTGCATGATTATTTATTTAATTAGATACTCATGTACTAACAGATGCATGTGTATCTGCACTGCAGGTGATGGAGGAGAGCTAGCTGCACCGTATATACCGTGTATGTAACGCACACCTGCTGACACACATGTACACATGTATACCACCATACCAACACGCTAATCAAACGGAGCTCTGCATGGCGACTGTACTCACGGAAATAAAGAGGATCATATCGACCGGTTCAACTGTATATCTAGTCATTAGTCTGACCACTGGCTTATTTGTTTGCTGCTGCTGATACTTTGAGCTGATGATGTGTGGCTCCCAGCATACTTTAATTCTTGTTCTTATTGTGTAGACATAGTTTGTCCCCGCAGCGTACGTACGTACATAATCTCGAGGATTAAAAAATGCATCCCCTGTGCGCGCGCGCGCACACACACATCATAGTGATCCGATCTGACCATCATCTGCTGGCACAGGAAGAAAAGAACAGAGGTTGCATTCACGCTTGTCTGCTCAATTTCAGAAAATGCGGTAGCTATAGCTACGCCGATCATGTTGGCGCAACACCATTGGGACGGCTGCTACGTGGACCAGATATGTGGGCCTTTGCGTCGTCGATTAGTTAGGTGTACCCAATTGAAACTGGACGACAGCCCGGTGGAAATTTATTGGGCGATTAGGCCTAACCAACACCACAAAAGACAAACGAAATGCTGGAGCTGGTGGCAGCAAGCCTCTCGTAACAGTCCCAGCGTTTCTCCGGCGCGGCGCATGCATAACGAGGGATACCGGCCGGTTCCGAATGTTGAATTAACGTGGTCCTAGCCCAAATTAGTATTCCATAGTCAATACTAAAGGCACACTTTAATACTATAGTGTACTAGTATTTTAATATCATACCAGAAGTACAAGAGACAATTCAAT